Collage of mobile phones, apple watch, pulse oximeter, mood ring, iPad, and glucose monitoring device,

JupyterHealth: A platform for interoperability, insight, and innovation in digital health

JupyterHealth is a free, open-source, modular platform that eliminates data silos by integrating real-time data from wearables, IoT devices, mobile apps, and EHRs into a unified, secure, AI-ready ecosystem. The Commons Project is a founding partner.

Jupyter Health logo

How it works

JupyterHealth combines a horizontal foundation for data interoperability with vertical solutions for specific clinical and research use cases.

Data Acquisition Brings data into the JupyterHealth ecosystem.
Data Management JupyterHealth Exchange securely stores data and exposes it via a standards-based FHIR API.
Data Analysis A specialized JupyterHub provides clinicians and researchers a browser-based notebook environment.
EHR Integration Surfaces analyses and visualizations for participating patients directly in the EHR, via SMART on FHIR.

Where It's In Use

Programs running on JupyterHealth include:

  • Diabetes

  • Hypertension

  • Heart Failure

  • Respiratory Health

  • Metabolic Health (Agile Metabolic Health project, led by UCSF)

  • Climate & Sleep

  • Patient Engagement

  • Clinical Language Bridge

  • Perioperative Monitoring

Built on Open Principles

  • Modular: composable components with clear interfaces.

  • Open: released under a modified-BSD open-source license.

  • Standards-based: HL7 FHIR, IEEE, Open mHealth.

  • Secure: OAuth-based authentication, scoped access.

  • Community-focused: built in the open with clinicians, researchers, developers, and users.

Who's Building It

JupyterHealth is a transdisciplinary effort led by The Commons Project Foundation, UCSF, UC Berkeley (BIDS), Duke University (Big Ideas Lab), Project Jupyter, and 2i2c.

Our Role

  • Thought leadership on platform ethos, architecture, and interoperability.

  • Tools in CommonHealth that let users contribute their own data into JupyterHealth-powered programs.

  • Reference implementations of standards-based services for ingesting wearable and medical device data.

  • Driving adoption across U.S. health systems and tech vendors.

Watch JP Pollak and Ida Sim give an overview of the JupyterHealth platform

Youtube Video overview presentation of the JupyterHealth platform

Ways to Engage

  • Use it

    Free under a modified-BSD license. Health systems, universities, and researchers can deploy it themselves.

  • Get implementation help

    The Commons Project offers Advisory, Full Implementation, and Customer Support services for health systems.

  • Contribute

    Join us on GitHub and the JupyterHealth Zulip channel.

  • Partner

    If you're a health system, payer, foundation, or vendor wanting to build on JupyterHealth, we'd love to talk.

Links

Visit JupyterHealth.org

JupyterHealth on GitHub

JupyterHealth Community on Zulip

Learn about our JupyterHealth Implementation Services